Chemistry Structure of Proteins

Topics Covered :

● Structure of Proteins
● Fibrous Proteins
● Globular Proteins
● Denaturation of Proteins

Structure of Proteins :

`=>` Proteins are the polymers of `color{red}(α)`-amino acids and they are connected to each other by peptide bond or peptide linkage.

`=>` Chemically, peptide linkage is an amide formed between `color{red}(–COOH)` group and `color{red}(–NH_2)` group.

`=>` The reaction between two molecules of similar or different amino acids, proceeds through the combination of the amino group of one molecule with the carboxyl group of the other.

`=>` This results in the elimination of a water molecule and formation of a peptide bond `color{red}(–CO–NH–)`. The product of the reaction is called a dipeptide because it is made up of two amino acids. For example, when carboxyl group of glycine combines with the amino group of alanine we get a `color{green}("dipeptide")`, glycylalanine.

● If a third amino acid combines to a dipeptide, the product is called a `color{green}("tripeptide")`.

● A tripeptide contains three amino acids linked by two peptide linkages.

● Similarly when four, five or six amino acids are linked, the respective products are known as `color{green}("tetrapeptide")`, `color{green}("pentapeptide")` or `color{green}("hexapeptide")`, respectively.

● When the number of such amino acids is more than ten, then the products are called `color{green}("polypeptides")`.

● A polypeptide with more than hundred amino acid residues, having molecular mass higher than `10,000u` is called a `color{green}("protein")`.

● The distinction between a polypeptide and a protein is not very sharp.

● Polypeptides with fewer amino acids are likely to be called proteins if they ordinarily have a well defined conformation of a protein such as insulin which contains `51` amino acids.

`=>` Proteins can be classified into two types on the basis of their molecular shape.

Fibrous proteins :

`=>` When the polypeptide chains run parallel and are held together by hydrogen and disulphide bonds, then fibre– like structure is formed.

`=>` Such proteins are generally insoluble in water.

`=>` Some common examples are keratin (present in hair, wool, silk) and myosin (present in muscles), etc.

Globular proteins :

`=>` This structure results when the chains of polypeptides coil around to give a spherical shape.

`=>` These are usually soluble in water.

`=>` Insulin and albumins are the common examples of globular proteins.

`=>` Structure and shape of proteins can be studied at four different levels, i.e., primary, secondary, tertiary and quaternary, each level being more complex than the previous one.

(i) `color{green}("Primary Structure of Proteins ") ` : Proteins may have one or more polypeptide chains.

● Each polypeptide in a protein has amino acids linked with each other in a specific sequence and it is this sequence of amino acids that is said to be the primary structure of that protein.

● Any change in this primary structure i.e., the sequence of amino acids creates a different protein.

(ii) `color{green}("Secondary Structure of Proteins ")` : The secondary structure of protein refers to the shape in which a long polypeptide chain can exist.

● They are found to exist in two different types of structures viz. `color{red}(α)`-helix and `color{red}(β)`-pleated sheet structure.

● These structures arise due to the regular folding of the backbone of the polypeptide chain due to hydrogen bonding between `color{red}(- overset(overset(O)(||))C-)` and `color{red}(-NH-)` groups of the peptide bond.

● `color{red}(α)`-Helix is one of the most common ways in which a polypeptide chain forms all possible hydrogen bonds by twisting into a right handed screw (helix) with the `color{red}(–NH)` group of each amino acid residue hydrogen bonded to the of an adjacent turn of the helix as shown in Fig.14.1.

● In `color{red}(β)`-structure, all peptide chains are stretched out to nearly maximum extension and then laid side by side which are held together by intermolecular hydrogen bonds. The structure resembles the pleated folds of drapery and therefore is known as `color{red}(β)`-pleated sheet.

(iii) `color{green}("Tertiary Structure of Proteins ")` : The tertiary structure of proteins represents overall folding of the polypeptide chains i.e., further folding of the secondary structure.

● It gives rise to two major molecular shapes viz. fibrous and globular.

● The main forces which stabilise the `2°` and `3°` structures of proteins are hydrogen bonds, disulphide linkages, van der Waals and electrostatic forces of attraction.

(iv) `color{green}("Quaternary Structure of Proteins ")` : Some of the proteins are composed of two or more polypeptide chains referred to as sub-units.

● The spatial arrangement of these subunits with respect to each other is known as quaternary structure.

● A diagrammatic representation of all these four structures is given in Figure 14.3 where each coloured ball represents an amino acid.

Denaturation of Proteins :

`=>` Protein found in a biological system with a unique three-dimensional structure and biological activity is called a native protein.

`=>` When a protein in its native form, is subjected to physical change like change in temperature or chemical change like change in `color{red}(pH)`, the hydrogen bonds are disturbed.

● Due to this, globules unfold and helix get uncoiled and protein loses its biological activity. This is called denaturation of protein.

● During denaturation `2^°` and `3^°` structures are destroyed but `1^º` structure remains intact.

● The coagulation of egg white on boiling is a common example of denaturation.

● Another example is curdling of milk which is caused due to the formation of lactic acid by the bacteria present in milk.